Downloads

CRF data may be downloaded in either CSV or Stata fixed format via the Download link in the top menu. The download page shows a list of forms in the CRF and provides links to download the data for each form individually or for all forms (as a zip file).

Form data download page

Form data download page

Data dictionary

A data dictionary can be viewed which shows the fields for each table (there is one table per form). The field name, data type and label are displayed.

Form data dictionary

Data dictionary page

Encrypted PII fields

Fields containing personally identifiable information (PII) that have been configured in the CRF builder to be stored in an encrypted format will be downloaded with AES-256 encryption applied. This means these fields cannot be viewed or analysed without decryption. Decryption can be carried out using common decryption tools such as OpenSSL. Contact Sealed Envelope support for further instructions.

CSV format

The data for each form is provided in comma separated value format, which is a plain text file that can be opened in many spreadsheet or Statistical programs. The first row contains a header with the question labels for each column.

Viewing CSV file in spreadsheet

Viewing downloaded CSV file in spreadsheet

Every file contains a patient identifier field (identifier) and subject ID field (patientId) so that data stored on the same subject in different forms can be linked together.

Stata format

The data for each form is provided in Stata fixed format, which is a plain text file format with a dictionary ‘header’ that describes the format of the rows. Each row contains information from one saved form with a subject identifier field to identify the subject record it belongs to. The data can be easily imported into Stata using the infile command.

For example, to import the data from a baseline form called Interviewers questions, the following infile command would be used in Stata:

infile using InterviewersQuestionsVER1_Baseline.dct, clear
compress

where InterviewersQuestionsVER1_Baseline.dct is the full filesystem path to the downloaded file. The compress command is recommended to reduce the storage space allocated to each variable.

Example

Some interview data has been downloaded in Stata fixed format. There are two rows below the dictionary header because only data on two subjects have been entered so far:

dictionary {
  str244 identifier `"Patient identifier"'
  long id `"id"'
  long patientId `"Subject id"'
  str244 userIdentifier `"User who created row"'
  str244 lastUserIdentifier `"User who last updated row"'
  str244 created `"Timestamp for row creation (UTC)"'
  str244 updated `"Date & time of last update to row (UTC)"'
  str244 question1 `"Sex - Questions"'
  str244 question2 `"Marital status - Questions"'
  str244 question3 `"If other, please specify - Questions"'
  str244 question4 `"Have you had any previous episodes of depression? - Depression"'
  str244 question5 `"If so, how many - Depression. Number (up to 2 digits)"'
  str244 question6 `"Duration of current episode in weeks - Depression. Number (up to 3 digits)"'
  str244 question7 `"Are you using any treatments for depression at the moment? - Depression"'
  str244 question8 `"Treatment/Medication Name - Depression"'
  str244 reasonForEdit `"Reason for editing row"'
  str244 notes `"Notes"'
  str244 validationOverrides `"Justifications for overriding validation"'
  str244 validationStatus `"Validation status"'
  str244 validationNotes `"Validation notes"'
  str244 _dateEntered `"Date of study entry yyyy-mm-dd"'
  str244 _dateWithdrew `"Date of withdrawal from follow-up - Withdrawal."'
  str244 _site `"Site"'
  str244 _country `"Country"'
  str244 _visit `"Visit"'
}
"T5617" 1 1 "Sealed Envelope support (ID 1)" "Sealed Envelope support (ID 1)" "2016-03-23 11:36:19" "2016-03-23 11:36:19" "Male" "Partner - Living with" "" "Yes" "3" "3" "No" "" "" "" "{}" "Not validated" "" "2015-12-27" "" "1: UCL" "United Kingdom" "Baseline"
"T1719" 2 2 "Sealed Envelope support (ID 1)" "Sealed Envelope support (ID 1)" "2016-03-23 12:51:18" "2016-03-23 12:51:18" "Female" "Married" "" "No" "" "2" "No" "" "" "" "{}" "Not validated" "" "2016-01-31" "" "1: UCL" "United Kingdom" "Baseline"

The data is imported and compressed, and the output from Stata’s describe command can be seen in the screenshot. The variable names and variable descriptions have been picked up automatically from the dictionary header.

Form data imported into Stata

Form data imported into Stata

Category variables are stored as strings so can be tabulated without needing variable labels. Category variables can be encoded if storage space is an issue.

Tabulating imported form data

Tabulating data imported into Stata

Conversion notes

During conversion into Stata download format, note the following changes that are made to the data:

  • All strings are truncated at 244 characters
  • Newlines are replaced by spaces
  • Double quotes are replaced by single quotes

Stata with .do file format

This format provides a pair of Stata files per form: the raw data and a .do file to process the data. The data is imported by running the .do file within Stata. There are some differences to the Stata format described above to make analysis more convenient: categorical variables are stored as numeric values with value labels attached, and additional numeric variables are created for date fields.

Page updated 7 May 2014 17:52